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4.3. Identification of Single Species and Communities

chapter summary


ID Parameter Method

43_Artursson Identification of bacterial communities in soil T-RFLP identification of bacterial communities

43_Bodrossy Microbial presence and abundance Microbial diagnostic microarrays: target preparation and hybridisation

43_Brunner Identification of tree fine roots PCR amplification and RFLP analysis of fine root DNA

43_Corgie Bacterial community structure PCR-TGGE

43_Grebenc Identification and characterisation of types of ectomycorrhiza Anatomical and molecular identification and quantification of types of ectomycorrhiza

43_Jansa_a Cloning and sequencing of AMF DNA DNA extraction, PCR amplification, cloning and sequencing from the arbuscular mycorrhizal fungal (AMF) spores and roots

43_Jansa_b SSCP fingerprinting Assessment of sequence composition/diversity of arbuscular mycor-rhizal fungal (AMF) DNA by single strand conformation polymorphism (SSCP) analysis

43_Kobodosc Diversity assessment of Rhizobium loti populations BOX-PCR gel-electrophoresis

43_Peter_a Ectomycorrhizal DNA and RNA Sampling of ectomycorrhizas, DNA / RNA preparations, and genotyping

43_Peter_b Ectomycorrhizal RNA RNA extraction from ectomycorrhizas

43_Prosser_a Microbial community analysis Microbial community analysis by denaturing gradient gel electrophoresis (DGGE)

43_Prosser_b 13C-labelled DNA Stable isotope probing of microbial communities

43_Rosling_a Identification of ectomycorrhizal symbionts from individual root tips Part 1: DNA extraction

43_Rosling_b Identification of ectomycorrhizal symbionts from individual root tips Part 2: PCR-RFLP

43_Rosling_c Identification of ectomycorrhizal symbionts from individual root tips Part 3. Sequencing of the rDNA ITS region

43_Santos Arbuscular mycorrhizal fungi colonising plant roots Arbuscular mycorrhizal fungal community analysis by denaturing gradient gel electrophoresis (DGGE)

43_Shinano DNA in soil Determination of soil DNA content

43_Steinkellner Microconidia germination of Fusarium oxysporum in root exudates Microscopic analysis

43_Taylor Morphological identification of ectomycorrhiza Morphotyping of ectomycorrhizal roots

43_Zakhia Phylogenetic characterisation of Legume Nodulating Bacteria (LNB) SDS-PAGE; Amplified Ribosomal DNA Restriction Analysis and sequencing

> Contact: Walter Wenzel, e-mail: walter.wenzel@boku.ac.at, Phone: +43 1 47654 3125

Author: Markus Puschenreiter · last modified: 25.10.2007 21:39:36

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